PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01660.1.g00030.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 502aa    MW: 52267.2 Da    PI: 7.2755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01660.1.g00030.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29243302159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqK  kg++ pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg H h+
  Zpz_sc01660.1.g00030.1.sm.mkhc 243 MNDGCQWRKYGQKISKGNPRPRAYYRCTVApNCPVRKQVQRCAEDKSILITTYEGAHSHP 302
                                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-31228304IPR003657WRKY domain
SuperFamilySSF1182907.98E-27236304IPR003657WRKY domain
PROSITE profilePS5081127.91238304IPR003657WRKY domain
SMARTSM007741.0E-34243303IPR003657WRKY domain
PfamPF031061.0E-25244302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEVAVEGPLV EAEKRVDAKP EIAPIGRSAL PTVFESFQSP QRAASIEQEE SNRLEAARAE  60
MGEVKEENEH LKTLLSRIAS DHQSLQMRFL KVREQGAAKS TKLPAEEAPA AAPSPVAYDD  120
LVSLSLGTGA ANGAGARRKG HERSSSSSGT ADDDSHLSLG LGFGRPGKDD EKTEPVLNLN  180
LSSDSSSAED TAKPSEAESC RPGETRKSPS GGAGARDGGD DEVQQQAKKT RVSVRVKCDT  240
PTMNDGCQWR KYGQKISKGN PRPRAYYRCT VAPNCPVRKQ VQRCAEDKSI LITTYEGAHS  300
HPLPPAATAM ASTTSAAAAM LTAGSTSSTT AASQLARHHL QVASAAGLLG PTTNMVSTAT  360
SCPTITLDLT APALTPAAQS IMHSSPYAAA GYESKAVPAA WSTSGYPAYG GNHLPSYYAA  420
ARSSPAMGSL FGGLALSRPD QLFGQPSYEQ RSSSLGAQSA VAPVVTDTLA KAITSDPSFQ  480
SALAAMITSY MGRGGGGEAA QK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22230306176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227236KKTRVSVRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457211.10.0hypothetical protein SORBIDRAFT_03g003370
TrEMBLC5XM160.0C5XM16_SORBI; Putative uncharacterized protein Sb03g003370
STRINGSb03g003370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-56WRKY DNA-binding protein 72